Chinese Journal of Applied Chemistry ›› 2024, Vol. 41 ›› Issue (5): 687-702.DOI: 10.19894/j.issn.1000-0518.230318
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Xuan HU1, Tong-Chuan WU1, Xin-Dan AI1, Xing-Yue HE2, Hong-Kang XU1, Fei ZHENG1, Hao YUE1(), Yu-Lin DAI1()
Received:
2023-10-12
Accepted:
2024-03-09
Published:
2024-05-01
Online:
2024-06-03
Contact:
Hao YUE,Yu-Lin DAI
About author:
daiyl@ccucm.edu.cnSupported by:
CLC Number:
Xuan HU, Tong-Chuan WU, Xin-Dan AI, Xing-Yue HE, Hong-Kang XU, Fei ZHENG, Hao YUE, Yu-Lin DAI. The Anti-Cervical Cancer Mechanism of Shaofu Zhuyu Decoction Based on Liquid Chromatography Mass Spectrometry Combined with Network Pharmacology[J]. Chinese Journal of Applied Chemistry, 2024, 41(5): 687-702.
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URL: http://yyhx.ciac.jl.cn/EN/10.19894/j.issn.1000-0518.230318
Mol ID | Compounds | OB/% | DL | Origin |
---|---|---|---|---|
MOL001918 | Paeoniflorgenone | 87.59 | 0.37 | Paeoniae radix rubra |
MOL001925 | Paeoniflorin_qt | 68.18 | 0.40 | Paeoniae radix rubra |
MOL007016 | Paeoniflorigenone | 65.33 | 0.37 | Paeoniae radix rubra |
MOL006996 | 1-o-beta-d-Glucopyranosylpaeonisuffrone_qt | 65.08 | 0.35 | Paeoniae radix rubra |
MOL007022 | EvofolinB | 64.74 | 0.22 | Paeoniae radix rubra |
MOL007018 | 9-Ethyl-neo-paeoniaflorin A_qt | 64.42 | 0.30 | Paeoniae radix rubra |
MOL006992 | (2R,3R)-4-Methoxyl-distylin | 59.98 | 0.30 | Paeoniae radix rubra |
MOL007008 | 4-Ethyl-paeoniflorin_qt | 56.87 | 0.44 | Paeoniae radix rubra |
MOL007012 | 4-o-Methyl-paeoniflorin_qt | 56.7 | 0.43 | Paeoniae radix rubra |
MOL000492 | (+)-Catechin | 54.83 | 0.24 | Paeoniae radix rubra |
MOL000433 | FA | 68.96 | 0.71 | Chuanxiong rhizome |
MOL002140 | Perlolyrine | 65.95 | 0.27 | Chuanxiong rhizome |
MOL002151 | Senkyunone | 47.66 | 0.24 | Chuanxiong rhizome |
MOL002157 | Wallichilide | 42.31 | 0.71 | Chuanxiong rhizome |
MOL001494 | Mandenol | 42.00 | 0.19 | Chuanxiong rhizome |
MOL002135 | Myricanone | 40.60 | 0.51 | Chuanxiong rhizome |
MOL000359 | Sitosterol | 36.91 | 0.75 | Chuanxiong rhizome, Zingiberis rhizoma |
MOL002514 | Sexangularetin | 62.86 | 0.30 | Zingiberis rhizoma |
MOL002501 | [(1S)-3-[(E)-but-2-enyl]-2-methyl-4-oxo-1-cyclopent-2-enyl] (1R,3R)-3-[(E)-3-methoxy-2-methyl-3-oxoprop-1-enyl]-2,2-dimethylcyclopropane-1-carboxylate | 62.52 | 0.31 | Zingiberis rhizoma |
MOL002464 | 1-Monolinolein | 37.18 | 0.30 | Zingiberis rhizoma |
MOL000358 | beta-Sitosterol | 36.91 | 0.75 | Zingiberis rhizoma, Angelica sinensis radix, Foeniculi fructus, Typhae pollen |
MOL000979 | 2-Methoxyfuranoguaia-9-ene-8-one | 66.18 | 0.18 | Myrrha |
MOL001033 | Diayangambin | 63.84 | 0.81 | Myrrha |
MOL001031 | Epimansumbinol | 61.81 | 0.40 | Myrrha |
MOL001131 | Phellamurin_qt | 56.6 | 0.39 | Myrrha |
MOL001009 | Guggulsterol-VI | 54.72 | 0.43 | Myrrha |
MOL000988 | 4,17(20)-(cis)-Pregnadiene-3,16-dione | 51.42 | 0.48 | Myrrha |
MOL001013 | Mansumbinoic acid | 48.10 | 0.32 | Myrrha |
MOL000098 | Quercetin | 46.43 | 0.28 | Myrrha, Typhae pollen |
MOL001028 | (8R)-3-oxo-8-Hydroxy-polypoda -13E,17E,21-triene | 44.83 | 0.59 | Myrrha |
MOL001088 | 1α-Acetoxy-9,19-cyclolanost-24-en-3β-ol | 44.40 | 0.78 | Myrrha |
MOL006115 | Kaempferol-3-O-α-L-rhamnosyl(1→2)-β-D-glucoside_qt | 62.87 | 0.24 | Typhae pollen |
MOL000354 | Isorhamnetin | 49.60 | 0.31 | Typhae pollen |
MOL001439 | Arachidonic acid | 45.57 | 0.20 | Typhae pollen |
MOL001040 | (2R)-5,7-Dihydroxy-2-(4-hydroxyphenyl)chroman-4-one | 42.36 | 0.21 | Typhae pollen |
MOL000422 | Kaempferol | 41.88 | 0.24 | Typhae pollen |
MOL006111 | Testosterone palmitate | 34.14 | 0.71 | Typhae pollen |
MOL000449 | Stigmasterol | 43.83 | 0.76 | Angelica sinensis radix, Foeniculi fructus |
MOL000254 | Eugenol | 56.24 | 0.04 | Cinnamomi cortex |
MOL000118 | L-alpha-terpineol | 48.80 | 0.03 | Cinnamomi cortex |
MOL000198 | (R)-Linalool | 39.80 | 0.02 | Cinnamomi cortex |
MOL000475 | Anethole | 32.49 | 0.03 | Cinnamomi cortex |
MOL000991 | Cinnamaldehyde | 31.99 | 0.02 | Cinnamomi cortex |
MOL002380 | cis-Anethol | 30.86 | 0.03 | Cinnamomi cortex |
MOL000704 | Styrene | 29.55 | 0.01 | Cinnamomi cortex |
MOL000431 | Coumarin | 29.17 | 0.04 | Cinnamomi cortex |
MOL000250 | cis-Cinnamaldehyde | 27.21 | 0.02 | Cinnamomi cortex |
MOL000024 | alpha-Humulene | 22.98 | 0.06 | Cinnamomi cortex |
MOL001941 | Ammidin | 34.55 | 0.22 | Foeniculi fructus |
MOL004193 | Clarkeanidine | 86.65 | 0.54 | Corydalis rhizoma |
MOL001460 | Cryptopin | 78.74 | 0.72 | Corydalis rhizoma |
MOL004234 | 2,3,9,10-Tetramethoxy-13-methyl-5,6-dihydroisoquinolino[2,1-b]isoquinolin-8-one | 76.77 | 0.73 | Corydalis rhizoma |
MOL004071 | Hyndarin | 73.94 | 0.64 | Corydalis rhizoma |
MOL000791 | Bicuculline | 69.67 | 0.88 | Corydalis rhizoma |
MOL004195 | CORYDALINE | 65.84 | 0.68 | Corydalis rhizoma |
MOL000785 | Palmatine | 64.60 | 0.65 | Corydalis rhizoma |
MOL004191 | Capaurine | 62.91 | 0.69 | Corydalis rhizoma |
MOL004200 | Methyl-[2-(3,4,6,7-tetramethoxy-1-phenanthryl)ethyl]amine | 61.15 | 0.44 | Corydalis rhizoma |
MOL001463 | Dihydrosanguinarine | 59.31 | 0.86 | Corydalis rhizoma |
WLZ000001 | Ponalactone A | - | - | Trogopterus dung |
WLZ000002 | Uric acid | - | - | Trogopterus dung |
WLZ000003 | Wulingzhic acid | - | - | Trogopterus dung |
WLZ000004 | Japondipsaponin E1 | - | - | Trogopterus dung |
WLZ000005 | Urea | - | - | Trogopterus dung |
WLZ000006 | Trihydroxy isosterocholenic acid | - | - | Trogopterus dung |
Table 1 Candidate active ingredients of Shaofu Zhuyu Decoction
Mol ID | Compounds | OB/% | DL | Origin |
---|---|---|---|---|
MOL001918 | Paeoniflorgenone | 87.59 | 0.37 | Paeoniae radix rubra |
MOL001925 | Paeoniflorin_qt | 68.18 | 0.40 | Paeoniae radix rubra |
MOL007016 | Paeoniflorigenone | 65.33 | 0.37 | Paeoniae radix rubra |
MOL006996 | 1-o-beta-d-Glucopyranosylpaeonisuffrone_qt | 65.08 | 0.35 | Paeoniae radix rubra |
MOL007022 | EvofolinB | 64.74 | 0.22 | Paeoniae radix rubra |
MOL007018 | 9-Ethyl-neo-paeoniaflorin A_qt | 64.42 | 0.30 | Paeoniae radix rubra |
MOL006992 | (2R,3R)-4-Methoxyl-distylin | 59.98 | 0.30 | Paeoniae radix rubra |
MOL007008 | 4-Ethyl-paeoniflorin_qt | 56.87 | 0.44 | Paeoniae radix rubra |
MOL007012 | 4-o-Methyl-paeoniflorin_qt | 56.7 | 0.43 | Paeoniae radix rubra |
MOL000492 | (+)-Catechin | 54.83 | 0.24 | Paeoniae radix rubra |
MOL000433 | FA | 68.96 | 0.71 | Chuanxiong rhizome |
MOL002140 | Perlolyrine | 65.95 | 0.27 | Chuanxiong rhizome |
MOL002151 | Senkyunone | 47.66 | 0.24 | Chuanxiong rhizome |
MOL002157 | Wallichilide | 42.31 | 0.71 | Chuanxiong rhizome |
MOL001494 | Mandenol | 42.00 | 0.19 | Chuanxiong rhizome |
MOL002135 | Myricanone | 40.60 | 0.51 | Chuanxiong rhizome |
MOL000359 | Sitosterol | 36.91 | 0.75 | Chuanxiong rhizome, Zingiberis rhizoma |
MOL002514 | Sexangularetin | 62.86 | 0.30 | Zingiberis rhizoma |
MOL002501 | [(1S)-3-[(E)-but-2-enyl]-2-methyl-4-oxo-1-cyclopent-2-enyl] (1R,3R)-3-[(E)-3-methoxy-2-methyl-3-oxoprop-1-enyl]-2,2-dimethylcyclopropane-1-carboxylate | 62.52 | 0.31 | Zingiberis rhizoma |
MOL002464 | 1-Monolinolein | 37.18 | 0.30 | Zingiberis rhizoma |
MOL000358 | beta-Sitosterol | 36.91 | 0.75 | Zingiberis rhizoma, Angelica sinensis radix, Foeniculi fructus, Typhae pollen |
MOL000979 | 2-Methoxyfuranoguaia-9-ene-8-one | 66.18 | 0.18 | Myrrha |
MOL001033 | Diayangambin | 63.84 | 0.81 | Myrrha |
MOL001031 | Epimansumbinol | 61.81 | 0.40 | Myrrha |
MOL001131 | Phellamurin_qt | 56.6 | 0.39 | Myrrha |
MOL001009 | Guggulsterol-VI | 54.72 | 0.43 | Myrrha |
MOL000988 | 4,17(20)-(cis)-Pregnadiene-3,16-dione | 51.42 | 0.48 | Myrrha |
MOL001013 | Mansumbinoic acid | 48.10 | 0.32 | Myrrha |
MOL000098 | Quercetin | 46.43 | 0.28 | Myrrha, Typhae pollen |
MOL001028 | (8R)-3-oxo-8-Hydroxy-polypoda -13E,17E,21-triene | 44.83 | 0.59 | Myrrha |
MOL001088 | 1α-Acetoxy-9,19-cyclolanost-24-en-3β-ol | 44.40 | 0.78 | Myrrha |
MOL006115 | Kaempferol-3-O-α-L-rhamnosyl(1→2)-β-D-glucoside_qt | 62.87 | 0.24 | Typhae pollen |
MOL000354 | Isorhamnetin | 49.60 | 0.31 | Typhae pollen |
MOL001439 | Arachidonic acid | 45.57 | 0.20 | Typhae pollen |
MOL001040 | (2R)-5,7-Dihydroxy-2-(4-hydroxyphenyl)chroman-4-one | 42.36 | 0.21 | Typhae pollen |
MOL000422 | Kaempferol | 41.88 | 0.24 | Typhae pollen |
MOL006111 | Testosterone palmitate | 34.14 | 0.71 | Typhae pollen |
MOL000449 | Stigmasterol | 43.83 | 0.76 | Angelica sinensis radix, Foeniculi fructus |
MOL000254 | Eugenol | 56.24 | 0.04 | Cinnamomi cortex |
MOL000118 | L-alpha-terpineol | 48.80 | 0.03 | Cinnamomi cortex |
MOL000198 | (R)-Linalool | 39.80 | 0.02 | Cinnamomi cortex |
MOL000475 | Anethole | 32.49 | 0.03 | Cinnamomi cortex |
MOL000991 | Cinnamaldehyde | 31.99 | 0.02 | Cinnamomi cortex |
MOL002380 | cis-Anethol | 30.86 | 0.03 | Cinnamomi cortex |
MOL000704 | Styrene | 29.55 | 0.01 | Cinnamomi cortex |
MOL000431 | Coumarin | 29.17 | 0.04 | Cinnamomi cortex |
MOL000250 | cis-Cinnamaldehyde | 27.21 | 0.02 | Cinnamomi cortex |
MOL000024 | alpha-Humulene | 22.98 | 0.06 | Cinnamomi cortex |
MOL001941 | Ammidin | 34.55 | 0.22 | Foeniculi fructus |
MOL004193 | Clarkeanidine | 86.65 | 0.54 | Corydalis rhizoma |
MOL001460 | Cryptopin | 78.74 | 0.72 | Corydalis rhizoma |
MOL004234 | 2,3,9,10-Tetramethoxy-13-methyl-5,6-dihydroisoquinolino[2,1-b]isoquinolin-8-one | 76.77 | 0.73 | Corydalis rhizoma |
MOL004071 | Hyndarin | 73.94 | 0.64 | Corydalis rhizoma |
MOL000791 | Bicuculline | 69.67 | 0.88 | Corydalis rhizoma |
MOL004195 | CORYDALINE | 65.84 | 0.68 | Corydalis rhizoma |
MOL000785 | Palmatine | 64.60 | 0.65 | Corydalis rhizoma |
MOL004191 | Capaurine | 62.91 | 0.69 | Corydalis rhizoma |
MOL004200 | Methyl-[2-(3,4,6,7-tetramethoxy-1-phenanthryl)ethyl]amine | 61.15 | 0.44 | Corydalis rhizoma |
MOL001463 | Dihydrosanguinarine | 59.31 | 0.86 | Corydalis rhizoma |
WLZ000001 | Ponalactone A | - | - | Trogopterus dung |
WLZ000002 | Uric acid | - | - | Trogopterus dung |
WLZ000003 | Wulingzhic acid | - | - | Trogopterus dung |
WLZ000004 | Japondipsaponin E1 | - | - | Trogopterus dung |
WLZ000005 | Urea | - | - | Trogopterus dung |
WLZ000006 | Trihydroxy isosterocholenic acid | - | - | Trogopterus dung |
Compounds | Degree | Betweenness centrality | Closeness centrality | Structure |
---|---|---|---|---|
Quercetin | 351 | 0.435 155 | 0.489 569 | |
beta-Sitosterol | 144 | 0.042 876 | 0.389 812 | |
Stigmasterol | 115 | 0.034 907 | 0.388 093 | |
Kaempferol | 45 | 0.074 389 | 0.399 546 | |
Ellagic acid | 30 | 0.010 948 | 0.346 798 | |
Eugenol | 29 | 0.056 086 | 0.360 287 | |
Arachidonic acid | 23 | 0.063 158 | 0.350 947 | |
Baicalein | 23 | 0.041 211 | 0.367 816 | |
Isorhamnetin | 22 | 0.025 932 | 0.368 586 | |
Trihydroxy isosterocholenic acid | 21 | 0.074 025 | 0.374 070 |
Table 2 Topological parameters of the nodes of active components in Shaofu Zhuyu Decoction
Compounds | Degree | Betweenness centrality | Closeness centrality | Structure |
---|---|---|---|---|
Quercetin | 351 | 0.435 155 | 0.489 569 | |
beta-Sitosterol | 144 | 0.042 876 | 0.389 812 | |
Stigmasterol | 115 | 0.034 907 | 0.388 093 | |
Kaempferol | 45 | 0.074 389 | 0.399 546 | |
Ellagic acid | 30 | 0.010 948 | 0.346 798 | |
Eugenol | 29 | 0.056 086 | 0.360 287 | |
Arachidonic acid | 23 | 0.063 158 | 0.350 947 | |
Baicalein | 23 | 0.041 211 | 0.367 816 | |
Isorhamnetin | 22 | 0.025 932 | 0.368 586 | |
Trihydroxy isosterocholenic acid | 21 | 0.074 025 | 0.374 070 |
Genes | Degree | Betweenness centrality | Closeness centrality |
---|---|---|---|
PTGS2 | 91 | 0.170 709 83 | 0.495 774 65 |
PTGS1 | 76 | 0.102 475 29 | 0.466 843 50 |
NCOA2 | 58 | 0.052 615 02 | 0.399 092 97 |
RXRA | 50 | 0.033 608 03 | 0.395 505 62 |
KCNH2 | 48 | 0.024 529 62 | 0.391 111 11 |
ADRB2 | 47 | 0.021 468 11 | 0.388 520 97 |
CHRM1 | 47 | 0.011 673 96 | 0.333 333 33 |
CHRM3 | 46 | 0.007 195 67 | 0.317 689 53 |
ADRA1B | 45 | 0.009 294 5 | 0.330 827 07 |
PGR | 39 | 0.047 171 16 | 0.344 422 70 |
Table 3 Topological parameters of the nodes of therapeutic target
Genes | Degree | Betweenness centrality | Closeness centrality |
---|---|---|---|
PTGS2 | 91 | 0.170 709 83 | 0.495 774 65 |
PTGS1 | 76 | 0.102 475 29 | 0.466 843 50 |
NCOA2 | 58 | 0.052 615 02 | 0.399 092 97 |
RXRA | 50 | 0.033 608 03 | 0.395 505 62 |
KCNH2 | 48 | 0.024 529 62 | 0.391 111 11 |
ADRB2 | 47 | 0.021 468 11 | 0.388 520 97 |
CHRM1 | 47 | 0.011 673 96 | 0.333 333 33 |
CHRM3 | 46 | 0.007 195 67 | 0.317 689 53 |
ADRA1B | 45 | 0.009 294 5 | 0.330 827 07 |
PGR | 39 | 0.047 171 16 | 0.344 422 70 |
Gene targets | Small molecule compounds | PDB ID | Binding energy/(kJ·mol-1) |
---|---|---|---|
IL6 | quercetin | 1ALU | -24.48 |
IL6 | paeoniflorin | 1ALU | -26.48 |
TNF | quercetin | 1A8M | -20.13 |
TNF | paeoniflorin | 1A8M | -14.77 |
TNF | kaempferol | 1A8M | -21.51 |
AKT1 | quercetin | 1UNQ | -24.39 |
AKT1 | baicalein | 1UNQ | -23.93 |
AKT1 | kaempferol | 1UNQ | -24.56 |
TP53 | quercetin | 1AIE | -24.56 |
TP53 | baicalein | 1AIE | -24.85 |
IL1B | quercetin | 1L2H | -18.58 |
PTGS2 | myricanone | 5F1A | -29.29 |
PTGS2 | 24240-05-9 | 5F1A | -29.16 |
PTGS2 | fumarine | 5F1A | -30.79 |
PTGS2 | myrrhanol C | 5F1A | -28.20 |
PTGS2 | myrrhanones B | 5F1A | -24.18 |
PTGS2 | 15α-hydroxymansumbinone | 5F1A | -32.17 |
PTGS2 | 3-methoxyfuranoguaia-9- en-8-one | 5F1A | -24.31 |
ESR1 | ST057701 | 1L2I | -28.87 |
EGFR | quercetin | 4I22 | -29.62 |
Table 4 Molecular docking of active components of Shaofu Zhuyu Decoction to key targets
Gene targets | Small molecule compounds | PDB ID | Binding energy/(kJ·mol-1) |
---|---|---|---|
IL6 | quercetin | 1ALU | -24.48 |
IL6 | paeoniflorin | 1ALU | -26.48 |
TNF | quercetin | 1A8M | -20.13 |
TNF | paeoniflorin | 1A8M | -14.77 |
TNF | kaempferol | 1A8M | -21.51 |
AKT1 | quercetin | 1UNQ | -24.39 |
AKT1 | baicalein | 1UNQ | -23.93 |
AKT1 | kaempferol | 1UNQ | -24.56 |
TP53 | quercetin | 1AIE | -24.56 |
TP53 | baicalein | 1AIE | -24.85 |
IL1B | quercetin | 1L2H | -18.58 |
PTGS2 | myricanone | 5F1A | -29.29 |
PTGS2 | 24240-05-9 | 5F1A | -29.16 |
PTGS2 | fumarine | 5F1A | -30.79 |
PTGS2 | myrrhanol C | 5F1A | -28.20 |
PTGS2 | myrrhanones B | 5F1A | -24.18 |
PTGS2 | 15α-hydroxymansumbinone | 5F1A | -32.17 |
PTGS2 | 3-methoxyfuranoguaia-9- en-8-one | 5F1A | -24.31 |
ESR1 | ST057701 | 1L2I | -28.87 |
EGFR | quercetin | 4I22 | -29.62 |
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