[1] | Felsenfeld G,Rich A. Studies on the Formation of Two- and Three-stranded Polyribonucleotides[J]. Biochim Biophys Acta,1957,26(3):457-468. | [2] | Raghunathan G,Miles H T,Sasisekharan V. Symmetry and Structure of RNA and DNA Triple Helices[J]. Biopolymers,1995,36(3):333-343. | [3] | Helene C,Montenay-Garestier T,Saison T,et al. Oligodeoxynucleotides Covalently Linked to Intercalating Agents:A New Class of Gene Regulatory Substances[J]. Biochimie,1985,67(7-8):777-783. | [4] | Zerial A,Thuong N T,Helene C. Selective Inhibition of the Cytopathic Effect of Type A Influenza Viruses by Oligodeoxynucleotides Covalently Linked to an Intercalating Agent[J]. Nucl Acids Res,1987,15(23):9909-9919. | [5] | Goni J R,Cruz X,Orozco M. Triplex-forming Oligonucleotide Target Sequences in the Human Genome[J]. Nucl Acids Res,2004,32(1):354-360. | [6] | Frank-Kamenetskii M D,Mirkin S M. Triplex DNA Structures[J]. Annu Rev Biochem,1995,64:65-95. | [7] | Duca M,Vekhoff P,Oussedik K,et al. The Triple Helix:50 Years Later, the Outcome[J]. Nucl Acids Res,2008,36(16):5123-5138. | [8] | Ohkubo A,Yamada K,Ito Y,et al. Synthesis and Triplex-forming Properties of Oligonucleotides Capable of Recognizing Corresponding DNA Duplexes Containing Four Base Pairs[J]. Nucl Acids Res,2015,43(12):5675-5686. | [9] | Alam M R,Majumdar A,Thazhathveetil A K,et al. Extensive Sugar Modification Improves Triple Helix Forming Oligonucleotide Activity in Vitro but Reduces Activity in Vivo[J]. Biochemistry,2007,46(35):10222-10233. | [10] | Evans K,Bhamra I,Wheelhouse R T,et al. Stabilization of a Bimolecular Triplex by 3'-s-Phosphorothiolate Modifications:An NMR and UV Thermal Melting Investigation[J]. Chemistry,2015,21(19):7278-7284. | [11] | Scaria P V,Shafeer R H. Binding of Ethidium Bromide to a DNA Triple Helix. Evidence for Intercalation[J]. J Biol Chem,1991,266(9):5417-5423. | [12] | Tuite E,Norden B. Intercalative Interactions of Ethidium Dyes with Triplex Structures[J]. Bioorg Med Chem,1995,3(6):701-711. | [13] | Mergny J L,Duval-Valentin G,Nguyen C H,et al. Triple Helix-specific Ligands[J]. Science,1992,256(5064):681-684. | [14] | Keppler M D,James P L,Neidle S,et al. DNA Sequence Specificity of Triplex-binding Ligands[J]. Eur J Biochem,2003,270(24):4982-4992. | [15] | Vinogradov S,Roig V,Sergueeva Z,et al. Synthesis and Binding Properties of Oligo-2'-deoxyribonucleotides Conjugated with Triple-helix-specific Intercalators:Benzo[e] and Benzo[g] Pyridoindoles[J]. Bioconjug Chem,2003,14(1):120-135. | [16] | Marchand C,Nguyen C H,Ward B,et al. A New Family of Sequence-specific DNA-cleaving Agents Directed by Triple-helical Structures:Benzopyridoindole-EDTA Conjugates[J]. Chemistry,2000,6(9):1559-1563. | [17] | Baily C,Marchand C,Hung-Nguyen C,et al. Localized Chemical Reactivity in Double-stranded DNA Associated with the Intercalative Binding of Benzo[e]pyridoindole and Benzo[g]pyridoindole Triple-helix-stabilizing Ligands[J]. Eur J Biochem,1995,232(1):66-76. | [18] | Xue L,Xi H,Kumar S,et al. Probing the Recognition Surface of a DNA Triplex:Binding Studies with Intercalator-neomycin Conjugates[J]. Biochemistry,2010,49(26):5540-5552. | [19] | Xi H,Arya D P. Recognition of Triple Helical Nucleic Acids by Aminoglycosides[J]. Curr Med Chem Anticancer Agents,2005,5(4):327-338. | [20] | Arya D P,Xue L,Tennant P. Combining the Best in Triplex Recognition:Synthesis and Nucleic Acid Binding of a BQQ-neomycin Conjugate[J]. J Am Chem Soc,2003,125(27):8070-8071. | [21] | Fu Z,Cui Y,Cui F,et al. Modeling Techniques and Fluorescence Imaging Investigation of the Interactions of an Anthraquinone Derivative with HSA and ctDNA[J]. Spectrochim Acta A Mol Biomol Spectrosc,2016,153:572-579. | [22] | Yang L,Fu Z,Niu X,et al. Probing the Interaction of Anthraquinone with DNA by Spectroscopy, Molecular Modeling and Cancer Cell Imaging Technique[J]. Chem Biol Interact,2015,233:65-70. | [23] | Marković V,Debeljak N,Stanojković T,et al. Anthraquinone-chalcone Hybrids:Synthesis, Preliminary Antiproliferative Evaluation and DNA-interaction Studies[J]. Eur J Med Chem, 2015, 89:401-410. | [24] | Keppler M D,James P L,Neidle S,et al. DNA Sequence Specificity of Triplex-binding Ligands[J]. Eur J Biochem,2003,270(24):4982-4992. | [25] | Keppler M,Zegrocka O,Strekowski L,et al. DNA Triple Helix Stabilisation by a Naphthylquinoline Dimer[J]. FEBS Lett,1999,447(2/3):223-226. | [26] | Polak M,Hud N V. Complete Disproportionation of Duplex Poly(dT)*Poly(dA) into Triplex Poly(dT)*Poly(dA)*Poly(dT) and Poly(dA) by Coralyne[J]. Nucl Acids Res,2002,30(4):983-992. | [27] | Chaires J B. Competition Dialysis:an Assay to Measure the Structural Selectivity of Drug-Nucleic Acid Interactions[J]. J Biomol Struct Dyn,2005,5(4):339-352. | [28] | Ren J,Chaires J B. Sequence and Structural Selectivity of Nucleic Acid Binding Ligands[J]. Biochemistry,1999,38(49):16067-16075. | [29] | Chaires J B. Competition dialysis:An Assay to Measure the Structural Selectivity of Drug-nucleic Acid Interactions[J]. Curr Med Chem Anticancer Agents,2005,5(4):339-352. | [30] | Chaires J B. Structural Selectivity of Drug-nucleic Acid Interactions Probed by Competition Dialysis[J]. Top Curr Chem,2005,253:33-53. | [31] | Holt P A,Ragazzon P,Strekowski L,et al. Discovery of Novel Triple Helical DNA Intercalators by an Integrated Virtual and Actual Screening Platform[J]. Nucl Acids Res,2009,37(4):1280-1287. | [32] | Mirkin C A,Letsinger R L,Mucic R C,et al. A DNA-based Method for Rationally Assembling Nanoparticles into Macroscopic Materials[J]. Nature,1996,382(6592):607-609. | [33] | Thaxton C S,Georganopoulou D G,Mirkin C A. Gold Nanoparticle Probes for the Detection of Nucleic Acid Targets[J]. Clin Chim Acta,2006,363(1/2):120-126. | [34] | Han M S, Lytton-Jean A K,Mirkin C A. A Gold Nanoparticle Based Approach for Screening Triplex DNA Binders[J]. J Am Chem Soc,2006,128(15):4954-4955. | [35] | Su X,Aung K M,Lukman S,et al. Gold Nanoparticle-based Förster Resonance Energy Transfer(FRET) Analysis of Estrogen Receptor:DNA Interaction[J]. Methods Mol Biol,2016,1366:219-232. | [36] | Chen C,Song G,Yang X,et al. A Gold Nanoparticle-based Strategy for Label-free and Colorimetric Screening of DNA Triplex Binders[J]. Biochimie,2010,92(10):1416-1421. | [37] | Zhao W,Brook M A,Li Y. Design of Gold Nanoparticle-based Colorimetric Biosensing Assays[J]. Chembiochem,2008,9(15):2363-2371. | [38] | Lytton-Jean A K,Han M S,Mirkin C A. Microarray Detection of Duplex and Triplex DNA Binders with DNA-modified Gold Nanoparticles[J]. Anal Chem,2007,79(15):6037-6041. | [39] | Kuralay F,Erdem A. Gold Nanoparticle/Polymer Nanocomposite for Highly Sensitive Drug-DNA Interaction[J]. Analyst,2015,140(8):2876-2880. | [40] | Shao L,Diao J J,Tang Z,et al. Gold Nanoparticle Wires for Sensing DNA and DNA/Protein Interactions[J]. Nanoscale,2014,6(8):4089-4095. | [41] | Ahmadi F,Jamali N. Study of DNA-Deltamethrin Binding by Voltammetry, Competitive Fluorescence, Thermal Denaturation, Circular Dichroism, and Atomic Force Microscopy Techniques[J]. DNA Cell Biol,2012,31(5):811-819. | [42] | Ren J,Chaires J B. Sequence and Structural Selectivity of Nucleic Acid Binding Ligands[J]. Biochemistry,1999,38(49):16067-16075. | [43] | Shi X,Chaires J B. Sequence- and Structural-selective Nucleic Acid Binding Revealed by the Melting of Mixtures[J]. Nucl Acids Res,2006,34(2):e14. | [44] | Xue L,Xi H,Kumar S,et al. Probing the Recognition Surface of a DNA Triplex:Binding Studies with Intercalator-neomycin Conjugates[J]. Biochemistry,2010,49(26):5540-5552. | [45] | Wang J,Liu S,Ma B,et al. Rapid Screening and Detection of XOD Inhibitors from S.Tamariscina by Ultrafiltration LC-PDA-ESI-MS Combined with HPCCC[J]. Anal Bioanal Chem,2014,406(28):7379-7387. | [46] | Zhu H,Liu S,Li X,et al. Bioactivity Fingerprint Analysis of Cyclooxygenase-2 Ligands from Radix aconiti by Ultrafiltration-UPLC-MSn[J]. Anal Bioanal Chem,2013,405(23):7437-7445. | [47] | ZHOU Hui,SONG Fengrui,LIU Zhiqiang,et al. Applications of Ultrafiltration Mass Spectrometry in the Studies on Interaction Between Small Drug Molecule and Biological Targer[J]. Prog Chem,2010,22(11):2207-2214(in Chinese). 周慧,宋凤瑞,刘志强,等. 超滤质谱技术在药物小分子与生物靶分子相互作用研究中的应用[J]. 化学进展,2010,22(11):2207-2214. | [48] | Su X,Kong L,Li X,et al. Biological Fingerprinting Analysis by Liquid Chromatography/Mass Spectrometry for Evaluation of DNA Structural Selectivity of Multiple Compounds in Natural Products[J]. J Comb Chem,2006,8(4):544-550. | [49] | Zhou J L,Qian Z M,Luo Y D,et al. Screening and Mechanism Study of Components Targeting DNA from the Chinese Herb Lonicera japonica by Liquid Chromatography/Mass Spectrometry and Fluorescence Spectroscopy[J]. Biomed Chromatogr,2008,22(10):1164-1172. | [50] | MA Lei,WANG Zhaofu,CHEN Lina,et al. Screening DNA Binders from Isoflavone Extracts of Red Clover by Centrifugal Ultrafiltration-LC-MSn[J]. Chem J Chinese Univ,2013,34(2):331-335(in Chinese). 马蕾,王兆伏,陈丽娜,等. 红车轴草总异黄酮成分DNA结合剂的超滤质谱筛选[J]. 高等学校化学学报,2013,34(2):331-335. | [51] | Cech N B,Enke C G. Practical Implications of Some Recent Studies in Electrospray Ionization Fundamentals[J]. Mass Spectrom Rev,2001,20(6):362-387. | [52] | Urathamakul T,Waller D J,Beck J L,et al. Comparison of Mass Spectrometry and Other Techniques for Probing Interactions Between Metal Complexes and DNA[J]. Inorg Chem,2008,47(15):6621-6632. | [53] | Rosu F,Gabelica V,Houssier C,et al. Triplex and Quadruplex DNA Structures Studied by Electrospray Mass Spectrometry[J]. Rapid Commun Mass Spectrom,2002,16(18):1729-1736. | [54] | Guittat L,Alberti P,Rosu F,et al. Interactions of Cryptolepine and Neocryptolepine with Unusual DNA Structures[J]. Biochimie,2003,85(5):535-547. | [55] | Wan C,Cui M,Song F,et al. A Study of the Non-covalent Interaction Between Flavonoids and DNA Triplexes by Electrospray Ionization Mass Spectrometry[J]. Int J Mass Spectrom,2009,283(1/2/3):48-55. | [56] | Wan C,Cui M,Song F,et al. Evaluation of Effects of Bivalent Cations on the Formation of Purine-rich Triple-helix DNA by ESI-FT-MS[J]. J Am Soc Mass Spectrom,2009,20(7):1281-1286. | [57] | Wan C,Guo X,Song F,et al. Interactions of Mitoxantrone with Duplex and Triplex DNA Studied by Electrospray Ionization Mass Spectrometry[J]. Rapid Commun Mass Spectrom,2008,22(24):4043-4048. | [58] | Ma L,Liu S,Song F,et al. Investigation of Noncovalent Interactions of Aconitine with Duplex, Triplex and G-quadruplex DNA by Electrospray Ionization Mass Spectrometry[J]. Rapid Commun Mass Spectrom,2014,28(7):839-842. | [59] | Brodbelt J S. Evaluation of DNA/Ligand Interactions by Electrospray Ionization Mass Spectrometry[J]. Annu Rev Anal Chem,2010,3:67-87. | [60] | Laughlin S,Wilson W D. May the Best Molecule Win:Competition ESI Mass Spectrometry[J]. Int J Mol Sci,2015,16(10):24506-24531. | [61] | Xu N,Yang H,Cui M,et al. High-performance Liquid Chromatography-electrospray Ionization-mass Spectrometry Ligand Fishing Assay:A Method for Screening Triplex DNA Binders from Natural Plant Extracts[J]. Anal Chem,2012,84(5):2562-2568. | [62] | Chaiet L,Wolf F J. The Properties of Streptavidin, a Biotin-binding Protein Produced by Streptomycetes[J]. Arch Biochem Biophys,1964,106:1-5. | [63] | Su X,Wu Y J,Robelek R,et al. Surface Plasmon Resonance Spectroscopy and Quartz Crystal Microbalance Study of Streptavidin Film Structure Effects on Biotinylated DNA Assembly and Target DNA Hybridization[J]. Langmuir,2005,21(1):348-353. | [64] | Antje J B,Jennifer P,Shirley F A. Universal Nucleic Acid Sequence Biosensor with Nanomolar Detection Limits[J]. Anal Chem,2004,76(4):888-894. | [65] | Su X,Wu Y J,Robelek R,et al. Surface Plasmon Resonance Spectroscopy and Quartz Crystal Microbalance Study of Streptavidin Film Structure Effects on Biotinylated DNA Assembly and Target DNA Hybridization[J]. Langmuir,2005,21(1):348-353. | [66] | Saito S T,Silva G,Pungartnik C,et al. Study of DNA-emodin Interaction by FTIR and UV-Vis Spectroscopy[J]. J Photochem Photobiol B,2012,111:59-63. | [67] | Ahmad I,Ahmad M. Dacarbazine as a Minor Groove Binder of DNA:Spectroscopic, Biophysical and Molecular Docking Studies[J]. Int J Biol Macromol,2015,79:193-200. | [68] | Plum G E,Park Y W,Singleton S F,et al. Thermodynamic Characterization of the Stability and the Melting Behavior of a DNA Triplex:a Spectroscopic and Calorimetric Study[J]. Proc Natl Acad Sci USA,1990,87(23):9436-9440. | [69] | DENG Shengguo,DENG Zeyuan,FAN Yawei,et al. Spectroscopic Investigation on the Interaction Between Astragal in from Lotus Leaf and DNA[J]. Spectrosc Spectr Anal,2010,30(2):476-480 (in Chinese). 邓胜国,邓泽元,范亚苇,等. 荷叶中紫云英苷和DNA相互作用的光谱学研究[J]. 光谱学与光谱分析,2010,30(2):476-480. | [70] | CAO Ying,HE Xiwen. Studies of Interaction of Phenazine Dye and DNA by UV-Vis Spectrum[J]. Chem J Chinese Univ,1998,19(5):714-716(in Chinese). 曹瑛,何锡文. 吩嗪染料与DNA分子相互作用的紫外-可见光谱研究[J]. 高等学校化学学报,1998,19(5):714-716. | [71] | Chiou C C,Chen S W,Luo J D,et al. Monitoring Triplex DNA Formation with Fluorescence Resonance Energy Transfer Between a Fluorophore-labeled Probe and Intercalating Dyes[J]. Anal Biochem,2011,416(1):1-7. | [72] | Shamsipur M,Memari Z,Ganjali M R,et al. Highly Sensitive Gold Nanoparticles-based Optical Sensing of DNA Hybridization Using Bis(8-hydroxyquinoline-5-solphonate)cerium(Ⅲ) Chloride as a Novel Fluorescence Probe[J]. J Pharm Biomed Anal,2016,118:356-362. | [73] | Chen Z,Zhang H,Ma X,et al. A Novel Fluorescent Reagent for Recognition of Triplex DNA with High Specificity and Selectivity[J]. Analyst,2015,140(22):7742-7747. | [74] | SHEN Jingshan,SUN Dandan,FU Lianchun,et al. Study on the Interaction of Anticancer Drugs and DNA Using Fluorescence Spectroscopy[J]. Spectrosc Spectr Anal,2005,25(2):232-234 (in Chinese). 沈景山,孙丹丹,付连春,等. 荧光光谱法研究抗癌药物与DNA的相互作用[J]. 光谱学与光谱分析,2005,25(2):232-234. | [75] | Scarlett G,Siligardi G,Kneale G G. Circular Dichroism for the Analysis of Protein-DNA Interactions[J]. Methods Mol Biol,2015,1334:299-312. | [76] | O'Mahony A M, Cronin M F, McMahon A,et al. Biophysical and Structural Characterisation of Nucleic Acid Complexes with Modified Cyclodextrins Using Circular Dichroism[J]. J Pharm Sci,2014,103(5):1346-1355. | [77] | LIU Zhenjia,SI Yikang,CHEN Xiaoguang. Application of Circular Dichroism to the Study of Interactions Between Small Molecular Compounds and DNA[J]. Acta Pharm Sin,2010,45(12):1478-1484(in Chinese). 刘振佳,司伊康,陈晓光. 圆二色谱测定技术在小分子化合物与DNA相互作用研究中的应用[J]. 药学学报,2010,45(12):1478-1484. | [78] | Velappan A B,Maity B,Kasper B,et al. Alteration in DNA Binding Pattern of Conformationally Locked NC(O)N System:A Spectroscopic Investigation[J]. Int J Biol Macromol,2016,85:497-504. | [79] | Cho C B,Jung K S,Kim J H,et al. Binding Mode of 4',6-Diamidino-2-phenylindole and Ethidium to Poly(dG).Poly(dC).Poly(dC)(+) Triplex and Poly(dG).Poly(dC) Duplex[J]. Biochim Biophys Acta,2001,1517(2):220-227. | [80] | Hegde A H,Seetharamappa J. Fluorescence and Circular Dichroism Studies on Binding and Conformational Aspects of an Anti-leukemic Drug with DNA[J]. Mol Biol Rep,2014,41(1):67-71. | [81] | Kypr J,Kejnovsk I,Renciuk D,et al. Circular Dichroism and Conformational Polymorphism of DNA[J]. Nucl Acids Res,2009,37(6):1713-1725. | [82] | Gondeau C,Maurizot J C,Durand M. Circular Dichroism and UV Melting Studies on Formation of an Intramolecular Triplex Containing Parallel T*A:T and G*G:C Triplets:Netropsin Complexation with the Triplex[J]. Nucl Acids Res,1998,26(21):4996-5003. | [83] | Yang X L,Wang A H. Structural Studies of Atom-specific Anticancer Drugs Acting on DNA[J]. Pharmacol Ther,1999,83(3):181-215. | [84] | Dhanaraj C J,Johnson J. Quinoxaline Based Bio-active Mixed Ligand Transition Metal Complexes:Synthesis, Characterization, Electrochemical, Antimicrobial, DNA Binding, Cleavage, Antioxidant and Molecular Docking Studies[J]. J Photochem Photobiol B,2015,151:100-109. |
|